Open Access

Yeast Cells in Microstructures Dataset

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Files

yeast_cell_in_microstructures_dataset.zip (Full dataset) (92.04 MB)
 yeast_cell_in_microstructures_visualizations.zip (Various visualizations of the dataset) (87.39 MB)

Date

2023-04-18

Type

Dataset

Authors

Reich, Christoph
Prangemeier, Tim
Françani, André
Koeppl, Heinz

Journal Title

Journal ISSN

Volume Title

Publisher

Abstract

Description

Yeast cell instance-segmentation dataset of the paper "An Instance Segmentation Dataset of Yeast Cells in Microstructures" [EMBC, 2023]. https://arxiv.org/abs/2304.07597 We present and publicly release (under MIT license) a dataset of yeast (Saccharomyces cerevisiae) cells in microstructures with instance segmentation annotations. The dataset is comprised of 493 densely annotated brightfield microscopy images (instance segmentation) of different TLFM experiments with different microstructures (traps). Please refer to our GitHub repository or to the paper for more information. Project page: https://christophreich1996.github.io/yeast_in_microstructures_dataset/ Code (data loading & evaluation): https://github.com/ChristophReich1996/Yeast-in-Microstructures-Dataset

Keywords

instance-segmentation, computer-vision, segmentation, cell-segmentation, yeast-cell

Citation

Identifier

https://tudatalib.ulb.tu-darmstadt.de/handle/tudatalib/3799
 https://doi.org/10.48328/tudatalib-1125

Endorsement

Related Resources

Is Part Of
https://arxiv.org/abs/2304.07597

DFG Classification

4.43-04 Künstliche Intelligenz und Maschinelle Lernverfahren
4.43-05 Bild- und Sprachverarbeitung, Computergraphik und Visualisierung, Human Computer Interaction, Ubiquitous und Wearable Computing

Project(s)

Faculty

Collections

Yeast-Cells-in-Microstructures-Dataset

License

MIT License
Except where otherwise noted, this license is described as MIT License